STATISTICAL ANALYSIS OF ARRAYS
Each array package comes with the CD required to extract the feature information. However, the CD does not explain what to do with the data after you have it in a database file. EcoArray can do the analysis for you. The microarrays can be any species (e.g., human, rat, mouse) and can be most platforms, including Agilent, Affymetrix and Illumina.
Basic Analysis. We use the latest versions of Agilent's Feature Extraction and Genespring microarray analysis software, as well as proprietary software to perform your analysis. Included are basic data filtering for outliers, normalization, PCA by conditions, ANOVA (one or two way based on your experiment), and lists of significant (p <0.05) genes that are changed by 2 fold or greater. This includes the Gene Ontology information when available.
Custom Analysis. This complements the basic analysis. If you want to dig deeper into your data, perform multiple analyses based on several different parameters, analyze the data with and without Mutliple Testing Corrections (MTC), or change the stringency criteria (e.g., p<0.01), then this is the way to do it. We can develop hierarchical clustering charts and othe representations of your data. The custom analysis is priced on an hourly scale